Paracoccus pantotrophus strain DSM 1403

Cocci

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paracoccus

Description

Paracoccus pantotrophus strain DSM 1403 is a coccus-shaped bacterium characterized by the presence of flagella. This motility feature enables the organism to navigate its environment effectively. The strain is noted for having a single replicon, which indicates a streamlined genomic organization, potentially facilitating efficient replication and cellular functions. The genomic information for Paracoccus pantotrophus strain DSM 1403 can be accessed through the accession number FPKI00000000.1, providing a resource for researchers interested in studying its genetic makeup and related traits. Biologically, Paracoccus pantotrophus is known for its versatility in metabolic capabilities, which can include the ability to utilize a variety of substrates for growth. This adaptability may contribute to its ecological role in various environments, particularly in soil and aquatic systems, where it can participate in nutrient cycling and organic matter decomposition. The combination of its coccus shape and flagellar motility suggests that it is well-suited for colonizing diverse niches and responding to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParacoccus
SpeciesParacoccus pantotrophus
Strainstrain DSM 1403

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatactivated sludge
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paracoccus pantotrophus strain DSM 1403 genome assembly, contig:

Gene Summary

Adenine Count

873177 bp

Thymine Count

875419 bp

Guanine Count

1838488 bp

Cytosine Count

1843143 bp

Genome Length

5431076 bp

Protein-coding Genes

5246 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
poly(a) polymeraseSAMN04244548_00802Not AvailablePositive818642 - 81980841597.9
atp-binding cassette, subfamily bSAMN04244548_00803Not AvailablePositive819808 - 82165865813.6
23s rrna m(5)u-1939 methyltransferaseSAMN04244548_00804Not AvailablePositive821655 - 82287543029.1
l,d-transpeptidase catalytic domainSAMN04244548_00805Not AvailablePositive822941 - 82345618698.5
hypothetical proteinSAMN04244548_00806Not AvailablePositive823752 - 82402410027.8
electron transfer flavoprotein fad-binding domain-containing proteinSAMN04244548_00807Not AvailablePositive824227 - 8245189867.79
catalaseSAMN04244548_00808Not AvailablePositive824908 - 82641655824.4
(s)-mandelate dehydrogenaseSAMN04244548_00809Not AvailableNegative826619 - 82782143017.7
dna-binding transcriptional regulator, marr familySAMN04244548_00810Not AvailableNegative827825 - 82838520626.2
putative spermidine/putrescine transport system substrate-binding proteinSAMN04244548_00811Not AvailablePositive828532 - 82956036020.0

Displaying genes 981 – 990 of 5398 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.