Paracoccus pantotrophus strain DSM 1403

Cocci

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paracoccus

Description

Paracoccus pantotrophus strain DSM 1403 is a coccus-shaped bacterium characterized by the presence of flagella. This motility feature enables the organism to navigate its environment effectively. The strain is noted for having a single replicon, which indicates a streamlined genomic organization, potentially facilitating efficient replication and cellular functions. The genomic information for Paracoccus pantotrophus strain DSM 1403 can be accessed through the accession number FPKI00000000.1, providing a resource for researchers interested in studying its genetic makeup and related traits. Biologically, Paracoccus pantotrophus is known for its versatility in metabolic capabilities, which can include the ability to utilize a variety of substrates for growth. This adaptability may contribute to its ecological role in various environments, particularly in soil and aquatic systems, where it can participate in nutrient cycling and organic matter decomposition. The combination of its coccus shape and flagellar motility suggests that it is well-suited for colonizing diverse niches and responding to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParacoccus
SpeciesParacoccus pantotrophus
Strainstrain DSM 1403

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatactivated sludge
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paracoccus pantotrophus strain DSM 1403 genome assembly, contig:

Gene Summary

Adenine Count

873177 bp

Thymine Count

875419 bp

Guanine Count

1838488 bp

Cytosine Count

1843143 bp

Genome Length

5431076 bp

Protein-coding Genes

5246 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative (di)nucleoside polyphosphate hydrolaseSAMN04244548_00730Not AvailablePositive754870 - 75536118197.8
membrane-bound lytic murein transglycosylase bSAMN04244548_00731Not AvailableNegative755454 - 75670443874.8
hypothetical proteinSAMN04244548_00732Not AvailableNegative756790 - 75710411058.0
cys-trna(pro) deacylase, prolyl-trna editing enzyme ybak/ebscSAMN04244548_00733Not AvailablePositive757161 - 75763116235.5
uncharacterized membrane protein yeaq/ymge, transglycosylase-associated protein familySAMN04244548_00734Not AvailableNegative757665 - 7579168207.47
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferaseSAMN04244548_00735Not AvailableNegative758023 - 75884729442.3
hypothetical proteinSAMN04244548_00736Not AvailablePositive758940 - 75976730728.0
hypothetical proteinSAMN04244548_00737Not AvailableNegative760774 - 76130418548.7
23s rrna (pseudouridine1915-n3)-methyltransferaseSAMN04244548_00738Not AvailableNegative761416 - 76188316711.4
ribosome-associated proteinSAMN04244548_00739Not AvailableNegative761887 - 76221912497.0

Displaying genes 911 – 920 of 5398 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.