Ruminococcus flavefaciens strain YL228

Coccianaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus flavefaciens strain YL228 is a Gram-positive cocci bacterium predominantly found in the gut and rumen of various hosts, including Homo sapiens (humans), Bos taurus (cattle), Ovis aries (sheep), and Sus scrofa (pigs). This strain features a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability within these diverse environments. The presence of flagella suggests that R. flavefaciens strain YL228 possesses motility capabilities, which could enhance its ability to navigate the complex gastrointestinal tract of its hosts. This motility may facilitate interactions with other microbial communities present in the gut, potentially influencing the overall microbial ecology. Ruminococcus flavefaciens is known for its role in the fermentation of polysaccharides, contributing to the breakdown of complex carbohydrates in the rumen, which is vital for the nutritional health of ruminants. Given its presence in both ruminant and non-ruminant hosts, this strain may also play a role in the digestion processes of humans and other species. In summary, Ruminococcus flavefaciens strain YL228 exemplifies a versatile gut bacterium with motility and a significant role in carbohydrate fermentation across multiple mammalian hosts. Its ecological significance in the digestion processes underscores the importance of microbial diversity in maintaining host health and efficient nutrient utilization.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus flavefaciens
Strainstrain YL228

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus flavefaciens strain YL228
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut; rumen
Biotic relationshipNot Available
Host(s)Homo sapiens, Bos taurus, Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus flavefaciens strain YL228 genome assembly, contig:

Gene Summary

Adenine Count

914172 bp

Thymine Count

902966 bp

Guanine Count

792437 bp

Cytosine Count

753831 bp

Genome Length

3365971 bp

Protein-coding Genes

2782 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protoporphyrinogen oxidaseSAMN02910280_0560Not AvailableNegative220604 - 22216359419.4
phosphomethylpyrimidine synthaseSAMN02910280_0561Not AvailableNegative222707 - 22402048218.2
putative hydroxymethylpyrimidine transporter cytxSAMN02910280_0562Not AvailableNegative224043 - 22523642187.8
hydroxymethylpyrimidine/phosphomethylpyrimidine kinaseSAMN02910280_0563Not AvailableNegative225236 - 22604228126.8
nadh-fmn oxidoreductase rutf, flavin reductase (dim6/ntab) familySAMN02910280_0564Not AvailablePositive226557 - 22733628343.3
flavodoxin domain-containing proteinSAMN02910280_0565Not AvailablePositive227377 - 22812928403.4
dna-binding protein hu-betaSAMN02910280_0566Not AvailablePositive228439 - 2287149681.76
hypothetical proteinSAMN02910280_0567Not AvailablePositive228733 - 22916414938.2
hypothetical proteinSAMN02910280_0568Not AvailableNegative229449 - 23044737450.0
pectate lyaseSAMN02910280_0569Not AvailablePositive230769 - 234197120984.0

Displaying genes 181 – 190 of 2834 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.