Porphyromonadaceae bacterium KHP3R9

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Porphyromonadaceae

Genus

Description

Porphyromonadaceae bacterium KHP3R9 is characterized by having a single replicon, which indicates a streamlined genomic organization that may influence its metabolic capabilities and adaptability. The bacterium is cataloged under the accession number FPBR00000000.1, which allows for easy identification and retrieval of its genomic sequence for further studies. As a member of the Porphyromonadaceae family, KHP3R9 is likely involved in anaerobic processes, possibly contributing to the degradation of complex organic materials in its ecological niche. This family is known for its role in various biogeochemical cycles, particularly in environments rich in organic matter, such as sediments and the gastrointestinal tracts of animals. The presence of a single replicon suggests that KHP3R9 may have a simpler regulatory mechanism for gene expression and replication, which could confer advantages in specific environmental conditions where rapid adaptation is essential. Understanding the genomic and ecological roles of Porphyromonadaceae bacterium KHP3R9 could provide insights into its contributions to nutrient cycling and its potential applications in biotechnology, particularly in waste treatment or bioremediation processes.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Porphyromonadaceae bacterium KHP3R9 genome assembly, contig:

Gene Summary

Adenine Count

869255 bp

Thymine Count

865231 bp

Guanine Count

816631 bp

Cytosine Count

817163 bp

Genome Length

3368280 bp

Protein-coding Genes

2784 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
metal-dependent hydrolase, endonuclease/exonuclease/phosphatase familySAMN05216364_103618Not AvailableNegative2752218 - 275307232784.8
succinate dehydrogenase subunit cSAMN05216364_103619Not AvailablePositive2753384 - 275407025688.1
succinate dehydrogenase subunit aSAMN05216364_103620Not AvailablePositive2754099 - 275610274790.8
succinate dehydrogenase subunit bSAMN05216364_103621Not AvailablePositive2756122 - 275687727416.0
outer membrane protein beta-barrel domain-containing proteinSAMN05216364_103622Not AvailablePositive2757061 - 275768723066.7
replication restart dna helicase priaSAMN05216364_103623Not AvailablePositive2757701 - 275993885549.3
isxo2-like transposase domain-containing proteinSAMN05216364_10371Not AvailablePositive2760290 - 276084821571.8
metal-dependent hydrolase, endonuclease/exonuclease/phosphatase familySAMN05216364_10372Not AvailablePositive2760866 - 276179835272.9
alpha-l-rhamnosidaseSAMN05216364_10373Not AvailablePositive2761814 - 2764912116987.0
peroxiredoxin family proteinSAMN05216364_10374Not AvailablePositive2765002 - 276555920565.8

Displaying genes 2261 – 2270 of 2830 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.