Dyella sp. OK004

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Dyella

Description

Dyella sp. OK004 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism is notable for having a single replicon, which is indicative of its genomic structure. The genomic sequence of Dyella sp. OK004 is accessible under the accession number FOZI00000000.1, providing a foundational reference for further studies and comparisons. As a member of the Dyella genus, this bacterium is likely to inhabit specific environmental niches, although the precise ecological roles are not outlined in the provided data. Generally, members of the Dyella genus are known to be involved in various biogeochemical processes, which can include the degradation of organic compounds and contributions to nutrient cycling. Understanding the characteristics of Dyella sp. OK004, particularly its Gram-negative nature and rod shape, is crucial for identifying its potential interactions within microbial communities. Such traits may influence its metabolic capabilities and resilience in diverse environments. This knowledge can aid in exploring the ecological significance of Dyella sp. OK004, particularly in relation to its potential applications in biotechnology or environmental remediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusDyella
SpeciesDyella sp. OK004
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dyella sp. OK004 genome assembly, contig: Ga0066746_18, whole

Gene Summary

Adenine Count

926870 bp

Thymine Count

906812 bp

Guanine Count

1543042 bp

Cytosine Count

1583757 bp

Genome Length

4960986 bp

Protein-coding Genes

4199 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cell wall-associated hydrolase, nlpc familySAMN05216570_0585Not AvailableNegative657865 - 65929251838.0
uncharacterized membrane proteinSAMN05216570_0586Not AvailableNegative659319 - 66047040766.0
transglutaminase-like enzyme, putative cysteine proteaseSAMN05216570_0587Not AvailablePositive660621 - 66212656224.5
tonb-dependent receptor plug domainSAMN05216570_0588Not AvailablePositive662175 - 665180110503.0
diaminopimelate decarboxylaseSAMN05216570_0589Not AvailablePositive665231 - 66651746813.0
membrane dipeptidaseSAMN05216570_0590Not AvailablePositive666514 - 66773744324.0
cubico group peptidase, beta-lactamase class c familySAMN05216570_0591Not AvailablePositive667724 - 66926556925.1
d-alanyl-d-alanine dipeptidaseSAMN05216570_0592Not AvailablePositive669246 - 66998327406.5
cubico group peptidase, beta-lactamase class c familySAMN05216570_0593Not AvailablePositive670003 - 67104638439.4
pimeloyl-acp methyl ester carboxylesteraseSAMN05216570_0594Not AvailablePositive671099 - 67211237199.5

Displaying genes 591 – 600 of 4257 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.