Dyella sp. OK004

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Dyella

Description

Dyella sp. OK004 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism is notable for having a single replicon, which is indicative of its genomic structure. The genomic sequence of Dyella sp. OK004 is accessible under the accession number FOZI00000000.1, providing a foundational reference for further studies and comparisons. As a member of the Dyella genus, this bacterium is likely to inhabit specific environmental niches, although the precise ecological roles are not outlined in the provided data. Generally, members of the Dyella genus are known to be involved in various biogeochemical processes, which can include the degradation of organic compounds and contributions to nutrient cycling. Understanding the characteristics of Dyella sp. OK004, particularly its Gram-negative nature and rod shape, is crucial for identifying its potential interactions within microbial communities. Such traits may influence its metabolic capabilities and resilience in diverse environments. This knowledge can aid in exploring the ecological significance of Dyella sp. OK004, particularly in relation to its potential applications in biotechnology or environmental remediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusDyella
SpeciesDyella sp. OK004
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dyella sp. OK004 genome assembly, contig: Ga0066746_18, whole

Gene Summary

Adenine Count

926870 bp

Thymine Count

906812 bp

Guanine Count

1543042 bp

Cytosine Count

1583757 bp

Genome Length

4960986 bp

Protein-coding Genes

4199 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phytanoyl-coa dioxygenase (phyh)SAMN05216570_2215Not AvailableNegative2506160 - 250700232083.9
diaminohydroxyphosphoribosylaminopyrimidine deaminaseSAMN05216570_2216Not AvailableNegative2507026 - 250814740182.4
transcriptional repressor nrdrSAMN05216570_2217Not AvailableNegative2508187 - 250870820008.0
glycine hydroxymethyltransferaseSAMN05216570_2218Not AvailableNegative2508729 - 250998245295.3
predicted dienelactone hydrolaseSAMN05216570_2219Not AvailablePositive2510129 - 251122039092.1
transcriptional regulator, tetr familySAMN05216570_2220Not AvailablePositive2511232 - 251184022272.5
predicted oxidoreductaseSAMN05216570_2221Not AvailablePositive2511905 - 251290035634.7
uncharacterized membrane protein yoat, duf817 familySAMN05216570_2222Not AvailableNegative2512913 - 251377932102.8
atp-binding cassette protein, chvd familySAMN05216570_2223Not AvailablePositive2514016 - 251568362099.9
orotidine-5'-phosphate decarboxylaseSAMN05216570_2224Not AvailablePositive2515751 - 251656329140.7

Displaying genes 2201 – 2210 of 4257 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.