[Clostridium] aminophilum strain F

Rod

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Lachnoclostridium

Description

Clostridium aminophilum strain F is a Gram-positive, rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This strain is predominantly found in the rumen and rumen fluid of its hosts, which include Bos (cattle) and Ovis aries (sheep). The organism has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and survival in the complex microbial ecosystem of the rumen. The presence of this strain in the rumen suggests its potential role in the digestion of fibrous plant materials, as well as its contribution to the overall fermentation process, which is critical for the nutritional efficiency of ruminants. The accession number FOZC00000000.1 provides a reference for genomic data related to this strain, allowing for further studies into its metabolic capabilities and interactions within the rumen microbiome. Understanding the ecological role of Clostridium aminophilum strain F can provide insights into the dynamics of microbial communities in the rumen and their impact on host health and nutrition. This highlights the importance of such microorganisms in the digestive processes of herbivorous animals and their potential influence on agricultural practices.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusLachnoclostridium
Species[Clostridium] aminophilum
Strainstrain F

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of [Clostridium] aminophilum strain F
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen; rumen fluid
Biotic relationshipNot Available
Host(s)Bos, Ovis aries
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

[Clostridium] aminophilum strain F genome assembly, contig:

Gene Summary

Adenine Count

766007 bp

Thymine Count

767109 bp

Guanine Count

790801 bp

Cytosine Count

789393 bp

Genome Length

3113820 bp

Protein-coding Genes

2572 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna mismatch repair protein mutsSAMN02910262_00558Not AvailableNegative664671 - 66731999247.2
l,d-transpeptidase catalytic domainSAMN02910262_00559Not AvailableNegative667495 - 66881147915.3
pp_00552SAMN02910262_00560Not AvailableNegative668832 - 670277Not Available
eal domain, c-di-gmp-specific phosphodiesterase class i (or its enzymatically inactive variant)SAMN02910262_00561Not AvailableNegative670506 - 67250976792.7
hypothetical proteinSAMN02910262_00562Not AvailableNegative672632 - 67485781549.0
cd2+/zn2+-exporting atpaseSAMN02910262_00563Not AvailableNegative675023 - 67694868942.0
heavy-metal-associated domain-containing proteinSAMN02910262_00564Not AvailableNegative677000 - 6772158206.89
arsr family transcriptional regulatorSAMN02910262_00565Not AvailableNegative677310 - 67764512922.6
hypothetical proteinSAMN02910262_00566Not AvailableNegative677858 - 6780738301.35
hypothetical proteinSAMN02910262_00567Not AvailableNegative678089 - 67844513244.9

Displaying genes 561 – 570 of 2637 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.