Parafilimonas terrae strain DSM 28286

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Parafilimonas

Description

Parafilimonas terrae strain DSM 28286 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged with the accession number FOXQ00000000.1, providing a reference point for further studies and genetic comparisons. This bacterium is part of the genus Parafilimonas, which is known for its unique ecological niche. The presence of only one replicon suggests a streamlined genetic organization, which may contribute to its adaptability and efficiency in its environment. Understanding the genomic characteristics of Parafilimonas terrae can offer insights into its metabolic capabilities and potential roles in its ecosystem. The streamlined genome may allow Parafilimonas terrae to efficiently utilize available resources in its habitat, potentially influencing nutrient cycling or other ecological interactions. Further investigation into its ecological role could reveal its significance in soil microbiomes or other environments where it may reside. Overall, the genomic traits of Parafilimonas terrae strain DSM 28286 indicate a well-adapted organism that could play a vital role in its ecological context.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusParafilimonas
SpeciesParafilimonas terrae
Strainstrain DSM 28286

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parafilimonas terrae strain DSM 28286 genome assembly, contig:

Gene Summary

Adenine Count

1514810 bp

Thymine Count

1497237 bp

Guanine Count

974149 bp

Cytosine Count

999214 bp

Genome Length

4985410 bp

Protein-coding Genes

4255 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
large subunit ribosomal protein l4SAMN05444277_101278Not AvailableNegative311756 - 31240023608.3
lsu ribosomal protein l3pSAMN05444277_101279Not AvailableNegative312455 - 31307222022.7
ssu ribosomal protein s10pSAMN05444277_101280Not AvailableNegative313406 - 31371111319.8
camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinasesSAMN05444277_101281Not AvailablePositive313982 - 31448820010.1
nadph2:quinone reductaseSAMN05444277_101282Not AvailablePositive314547 - 31550933952.2
doxx proteinSAMN05444277_101283Not AvailableNegative316041 - 31715041752.5
protein of unknown functionSAMN05444277_101284Not AvailableNegative317223 - 31777420967.3
uncharacterized damage-inducible protein dinb (forms a four-helix bundle)SAMN05444277_101285Not AvailableNegative317823 - 31831418511.5
radical sam superfamily proteinSAMN05444277_101286Not AvailableNegative318425 - 31972649336.7
hypothetical proteinSAMN05444277_101287Not AvailableNegative319745 - 32032622481.5

Displaying genes 281 – 290 of 4301 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.