Pseudomonas sagittaria strain JCM 18195

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Geopseudomonas

Description

Pseudomonas sagittaria strain JCM 18195 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is classified as mesophilic, with an optimal growth temperature of 29°C, indicating its preference for moderate temperature ranges typically found in various environmental niches. The strain possesses a single replicon, which is a notable genetic feature that can influence its replication and stability within its ecological context. The genomic data for Pseudomonas sagittaria strain JCM 18195 is available under the accession number FOXM00000000.1, providing a resource for further genetic and functional studies. Pseudomonas species are known for their metabolic versatility and ecological adaptability, often playing critical roles in nutrient cycling and biodegradation in diverse environments. The aerobic nature of strain JCM 18195 suggests its involvement in processes that require oxygen, such as the degradation of organic compounds. This trait can be particularly significant in soil and aquatic ecosystems, where the presence of oxygen influences microbial community dynamics and nutrient availability. In summary, Pseudomonas sagittaria strain JCM 18195 exemplifies the characteristics of aerobic, mesophilic bacteria with potential ecological significance in organic matter decomposition and nutrient cycling within its habitat. Its genetic information can further enhance our understanding of its functional roles in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusGeopseudomonas
SpeciesGeopseudomonas sagittaria
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sagittaria strain JCM 18195 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4105 genes

Non-Coding Genes

167 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trap transporter, dctm subunitSAMN05216229_1051Not AvailableNegative1651932 - 165314142080.0
trap-type c4-dicarboxylate transport system, small permease componentSAMN05216229_1052Not AvailableNegative1653138 - 165367119294.4
trap-type c4-dicarboxylate transport system, substrate-binding proteinSAMN05216229_1053Not AvailableNegative1653678 - 165470036554.8
outer membrane porin, oprd familySAMN05216229_1054Not AvailablePositive1655301 - 165654845374.1
arac family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory proteinSAMN05216229_1055Not AvailableNegative1656609 - 165751735002.5
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomeraseSAMN05216229_1056Not AvailablePositive1657723 - 165847226554.8
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomeraseSAMN05216229_1057Not AvailablePositive1658484 - 165926328915.4
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenaseSAMN05216229_1058Not AvailablePositive1659274 - 166073452859.6
3,4-dihydroxyphenylacetate 2,3-dioxygenaseSAMN05216229_1059Not AvailablePositive1660873 - 166179333809.2
5-carboxymethyl-2-hydroxymuconate isomeraseSAMN05216229_10510Not AvailablePositive1661806 - 166221614884.7

Displaying genes 1601 – 1610 of 4270 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.