Pseudomonas toyotomiensis strain JCM 15604

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Ectopseudomonas

Description

Pseudomonas toyotomiensis strain JCM 15604 is characterized by its rod-shaped morphology and the presence of flagella, which suggests a capability for motility in various environments. This strain possesses a single replicon, indicating a streamlined genomic organization that can potentially facilitate efficient replication and metabolic processes. The accession number for this strain is FOXK00000000.1, which serves as a reference for genetic and genomic studies. This information can be crucial for researchers looking to explore the genetic underpinnings of this organism and its potential applications in microbiology. In terms of biological and ecological insights, the presence of flagella in Pseudomonas toyotomiensis may enhance its adaptability and survival in diverse habitats, such as soil and water. This motility can facilitate the organism's ability to colonize various niches, contributing to its ecological role in nutrient cycling and possibly in the degradation of organic compounds. Overall, the traits of Pseudomonas toyotomiensis strain JCM 15604 highlight its potential significance within microbial communities and its utility in biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusEctopseudomonas
SpeciesEctopseudomonas toyotomiensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas toyotomiensis strain JCM 15604 genome assembly,

Gene Summary

Adenine Count

1027368 bp

Thymine Count

1025243 bp

Guanine Count

1717380 bp

Cytosine Count

1719813 bp

Genome Length

5489814 bp

Protein-coding Genes

5018 genes

Non-Coding Genes

206 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
eal domain, c-di-gmp-specific phosphodiesterase class i (or its enzymatically inactive variant)SAMN05216177_11165Not AvailablePositive4462355 - 446351843779.1
planctomycete cytochrome cSAMN05216177_11166Not AvailablePositive4463674 - 446457632075.8
protein sco1/2SAMN05216177_11167Not AvailableNegative4464562 - 446522424301.0
tat (twin-arginine translocation) pathway signal sequenceSAMN05216177_11168Not AvailableNegative4465243 - 446704867267.0
dgtpaseSAMN05216177_11169Not AvailablePositive4467609 - 446894049929.7
fusaric acid resistance protein-likeSAMN05216177_11170Not AvailablePositive4468953 - 447001738088.0
hd-gyp domain, c-di-gmp phosphodiesterase class ii (or its inactivated variant)SAMN05216177_11171Not AvailablePositive4470088 - 4473039109861.0
hypothetical proteinSAMN05216177_11172Not AvailableNegative4473143 - 447348412872.0
d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4)SAMN05216177_11173Not AvailablePositive4473733 - 447516952323.4
23s rrna m(2)g-2445 methyltransferaseSAMN05216177_11174Not AvailableNegative4475244 - 447742481586.4

Displaying genes 4241 – 4250 of 5224 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.