Pseudomonas toyotomiensis strain JCM 15604

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Ectopseudomonas

Description

Pseudomonas toyotomiensis strain JCM 15604 is characterized by its rod-shaped morphology and the presence of flagella, which suggests a capability for motility in various environments. This strain possesses a single replicon, indicating a streamlined genomic organization that can potentially facilitate efficient replication and metabolic processes. The accession number for this strain is FOXK00000000.1, which serves as a reference for genetic and genomic studies. This information can be crucial for researchers looking to explore the genetic underpinnings of this organism and its potential applications in microbiology. In terms of biological and ecological insights, the presence of flagella in Pseudomonas toyotomiensis may enhance its adaptability and survival in diverse habitats, such as soil and water. This motility can facilitate the organism's ability to colonize various niches, contributing to its ecological role in nutrient cycling and possibly in the degradation of organic compounds. Overall, the traits of Pseudomonas toyotomiensis strain JCM 15604 highlight its potential significance within microbial communities and its utility in biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusEctopseudomonas
SpeciesEctopseudomonas toyotomiensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas toyotomiensis strain JCM 15604 genome assembly,

Gene Summary

Adenine Count

1027368 bp

Thymine Count

1025243 bp

Guanine Count

1717380 bp

Cytosine Count

1719813 bp

Genome Length

5489814 bp

Protein-coding Genes

5018 genes

Non-Coding Genes

206 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein of unknown functionSAMN05216177_101215Not AvailableNegative206201 - 20657213833.3
hypothetical proteinSAMN05216177_101216Not AvailableNegative206668 - 20698511719.9
l-leucine-binding protein /l-isoleucine-binding protein /l-valine-binding proteinSAMN05216177_101217Not AvailablePositive207281 - 20840239233.6
l-leucine abc transporter membrane protein /l-isoleucine abc transporter membrane protein /l-valine abc transporter membrane proteinSAMN05216177_101218Not AvailablePositive208519 - 20944232385.7
l-leucine abc transporter membrane protein /l-isoleucine abc transporter membrane protein /l-valine abc transporter membrane proteinSAMN05216177_101219Not AvailablePositive209439 - 21069846151.5
l-leucine abc transporter atp-binding protein /l-isoleucine abc transporter atp-binding protein /l-valine abc transporter atp-binding proteinSAMN05216177_101220Not AvailablePositive210695 - 21146228138.1
l-leucine abc transporter atp-binding protein /l-isoleucine abc transporter atp-binding protein /l-valine abc transporter atp-binding proteinSAMN05216177_101221Not AvailablePositive211466 - 21216725486.1
hypothetical proteinSAMN05216177_101222Not AvailablePositive212411 - 21327133219.7
uracil-dna glycosylaseSAMN05216177_101223Not AvailableNegative213309 - 21399825626.7
hd-like signal output (hdod) domain, no enzymatic activitySAMN05216177_101224Not AvailablePositive214137 - 21494930062.3

Displaying genes 411 – 420 of 5224 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.