Pseudomonas toyotomiensis strain JCM 15604

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Ectopseudomonas

Description

Pseudomonas toyotomiensis strain JCM 15604 is characterized by its rod-shaped morphology and the presence of flagella, which suggests a capability for motility in various environments. This strain possesses a single replicon, indicating a streamlined genomic organization that can potentially facilitate efficient replication and metabolic processes. The accession number for this strain is FOXK00000000.1, which serves as a reference for genetic and genomic studies. This information can be crucial for researchers looking to explore the genetic underpinnings of this organism and its potential applications in microbiology. In terms of biological and ecological insights, the presence of flagella in Pseudomonas toyotomiensis may enhance its adaptability and survival in diverse habitats, such as soil and water. This motility can facilitate the organism's ability to colonize various niches, contributing to its ecological role in nutrient cycling and possibly in the degradation of organic compounds. Overall, the traits of Pseudomonas toyotomiensis strain JCM 15604 highlight its potential significance within microbial communities and its utility in biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusEctopseudomonas
SpeciesEctopseudomonas toyotomiensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas toyotomiensis strain JCM 15604 genome assembly,

Gene Summary

Adenine Count

1027368 bp

Thymine Count

1025243 bp

Guanine Count

1717380 bp

Cytosine Count

1719813 bp

Genome Length

5489814 bp

Protein-coding Genes

5018 genes

Non-Coding Genes

206 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
adp-ribose pyrophosphatase yjhb, nudix familySAMN05216177_110213Not AvailableNegative4388908 - 438946221260.6
nudix domain-containing proteinSAMN05216177_110214Not AvailablePositive4389612 - 439021722604.8
carbonic anhydrase or acetyltransferase, isoleucine patch superfamilySAMN05216177_110215Not AvailablePositive4390239 - 439076618726.5
hypothetical proteinSAMN05216177_110216Not AvailablePositive4390720 - 43909598971.97
formate-dependent phosphoribosylglycinamide formyltransferaseSAMN05216177_110217Not AvailablePositive4390981 - 439216242311.8
lysophospholipase l1SAMN05216177_110218Not AvailablePositive4392159 - 439289326566.4
mg2+ and co2+ transporter corb, contains duf21, cbs pair, and corc-hlyc domainsSAMN05216177_110219Not AvailableNegative4392865 - 439415147083.2
abc-type uncharacterized transport system, permease componentSAMN05216177_110220Not AvailableNegative4394162 - 439496229409.2
signal recognition particle subunit ffh/srp54 (srp54)SAMN05216177_110221Not AvailablePositive4395120 - 439649949240.6
ssu ribosomal protein s16pSAMN05216177_110222Not AvailablePositive4396641 - 43968929159.98

Displaying genes 4161 – 4170 of 5224 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.