Pseudomonas toyotomiensis strain JCM 15604

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Ectopseudomonas

Description

Pseudomonas toyotomiensis strain JCM 15604 is characterized by its rod-shaped morphology and the presence of flagella, which suggests a capability for motility in various environments. This strain possesses a single replicon, indicating a streamlined genomic organization that can potentially facilitate efficient replication and metabolic processes. The accession number for this strain is FOXK00000000.1, which serves as a reference for genetic and genomic studies. This information can be crucial for researchers looking to explore the genetic underpinnings of this organism and its potential applications in microbiology. In terms of biological and ecological insights, the presence of flagella in Pseudomonas toyotomiensis may enhance its adaptability and survival in diverse habitats, such as soil and water. This motility can facilitate the organism's ability to colonize various niches, contributing to its ecological role in nutrient cycling and possibly in the degradation of organic compounds. Overall, the traits of Pseudomonas toyotomiensis strain JCM 15604 highlight its potential significance within microbial communities and its utility in biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusEctopseudomonas
SpeciesEctopseudomonas toyotomiensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas toyotomiensis strain JCM 15604 genome assembly,

Gene Summary

Adenine Count

1027368 bp

Thymine Count

1025243 bp

Guanine Count

1717380 bp

Cytosine Count

1719813 bp

Genome Length

5489814 bp

Protein-coding Genes

5018 genes

Non-Coding Genes

206 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-threonine synthaseSAMN05216177_108294Not AvailableNegative3884279 - 388568851675.0
homoserine dehydrogenaseSAMN05216177_108295Not AvailableNegative3885747 - 388705146484.4
thiol:disulfide interchange protein dsbcSAMN05216177_108296Not AvailableNegative3887154 - 388788225997.4
peroxiredoxin, ohr subfamilySAMN05216177_108297Not AvailablePositive3888197 - 388851310861.0
tyrosyl-trna synthetaseSAMN05216177_1091Not AvailableNegative3888918 - 389011744483.6
murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domainSAMN05216177_1092Not AvailablePositive3890299 - 389172651920.4
anhydro-n-acetylmuramic acid kinaseSAMN05216177_1093Not AvailablePositive3891730 - 389282138580.1
iron-sulfur cluster insertion apoprotein erpaSAMN05216177_1094Not AvailableNegative3892872 - 389322212474.5
protein ccma, bactofilin familySAMN05216177_1095Not AvailableNegative3893295 - 389370514610.6
hypothetical proteinSAMN05216177_1096Not AvailableNegative3893695 - 389443828293.9

Displaying genes 3701 – 3710 of 5224 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.