Pseudomonas toyotomiensis strain JCM 15604

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Ectopseudomonas

Description

Pseudomonas toyotomiensis strain JCM 15604 is characterized by its rod-shaped morphology and the presence of flagella, which suggests a capability for motility in various environments. This strain possesses a single replicon, indicating a streamlined genomic organization that can potentially facilitate efficient replication and metabolic processes. The accession number for this strain is FOXK00000000.1, which serves as a reference for genetic and genomic studies. This information can be crucial for researchers looking to explore the genetic underpinnings of this organism and its potential applications in microbiology. In terms of biological and ecological insights, the presence of flagella in Pseudomonas toyotomiensis may enhance its adaptability and survival in diverse habitats, such as soil and water. This motility can facilitate the organism's ability to colonize various niches, contributing to its ecological role in nutrient cycling and possibly in the degradation of organic compounds. Overall, the traits of Pseudomonas toyotomiensis strain JCM 15604 highlight its potential significance within microbial communities and its utility in biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusEctopseudomonas
SpeciesEctopseudomonas toyotomiensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas toyotomiensis strain JCM 15604 genome assembly,

Gene Summary

Adenine Count

1027368 bp

Thymine Count

1025243 bp

Guanine Count

1717380 bp

Cytosine Count

1719813 bp

Genome Length

5489814 bp

Protein-coding Genes

5018 genes

Non-Coding Genes

206 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
catechol 2,3-dioxygenaseSAMN05216177_107197Not AvailablePositive3386762 - 338719915890.5
amino acid abc transporter substrate-binding protein, paat familySAMN05216177_107198Not AvailableNegative3387209 - 338795228035.0
short-chain dehydrogenaseSAMN05216177_107199Not AvailableNegative3387952 - 338879730353.3
iron-binding zinc finger cdgsh typeSAMN05216177_107200Not AvailableNegative3388830 - 33890698766.22
metal-dependent hydrolase, endonuclease/exonuclease/phosphatase familySAMN05216177_107201Not AvailablePositive3389094 - 339025143017.6
polar amino acid transport system substrate-binding proteinSAMN05216177_107202Not AvailablePositive3390348 - 339108228072.2
thiol-disulfide isomerase or thioredoxinSAMN05216177_107203Not AvailableNegative3391087 - 339189329563.4
atp-dependent helicase hrpbSAMN05216177_107204Not AvailableNegative3391901 - 339443592318.5
hypothetical proteinSAMN05216177_107205Not AvailablePositive3394564 - 339498314802.9
cation diffusion facilitator family transporterSAMN05216177_107206Not AvailablePositive3394988 - 339586931843.9

Displaying genes 3241 – 3250 of 5224 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.