Pseudomonas toyotomiensis strain JCM 15604

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Ectopseudomonas

Description

Pseudomonas toyotomiensis strain JCM 15604 is characterized by its rod-shaped morphology and the presence of flagella, which suggests a capability for motility in various environments. This strain possesses a single replicon, indicating a streamlined genomic organization that can potentially facilitate efficient replication and metabolic processes. The accession number for this strain is FOXK00000000.1, which serves as a reference for genetic and genomic studies. This information can be crucial for researchers looking to explore the genetic underpinnings of this organism and its potential applications in microbiology. In terms of biological and ecological insights, the presence of flagella in Pseudomonas toyotomiensis may enhance its adaptability and survival in diverse habitats, such as soil and water. This motility can facilitate the organism's ability to colonize various niches, contributing to its ecological role in nutrient cycling and possibly in the degradation of organic compounds. Overall, the traits of Pseudomonas toyotomiensis strain JCM 15604 highlight its potential significance within microbial communities and its utility in biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusEctopseudomonas
SpeciesEctopseudomonas toyotomiensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas toyotomiensis strain JCM 15604 genome assembly,

Gene Summary

Adenine Count

1027368 bp

Thymine Count

1025243 bp

Guanine Count

1717380 bp

Cytosine Count

1719813 bp

Genome Length

5489814 bp

Protein-coding Genes

5018 genes

Non-Coding Genes

206 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
soluble lytic murein transglycosylaseSAMN05216177_10563Not AvailableNegative2384424 - 238554840532.9
flagellar p-ring protein precursor flgiSAMN05216177_10564Not AvailableNegative2385552 - 238664637917.6
flagellar l-ring protein precursor flghSAMN05216177_10565Not AvailableNegative2386657 - 238731923514.8
flagellar basal-body rod protein flggSAMN05216177_10566Not AvailableNegative2387325 - 238811027043.0
flagellar basal-body rod protein flgfSAMN05216177_10567Not AvailableNegative2388189 - 238892025802.6
flagellar hook protein flgeSAMN05216177_10568Not AvailableNegative2388930 - 239011740980.7
flagellar basal-body rod modification protein flgdSAMN05216177_10569Not AvailableNegative2390154 - 239083123859.3
flagellar basal-body rod protein flgcSAMN05216177_10570Not AvailableNegative2390831 - 239125915545.2
flagellar basal-body rod protein flgbSAMN05216177_10571Not AvailableNegative2391262 - 239161512968.3
flagella basal body p-ring formation protein flgaSAMN05216177_10572Not AvailablePositive2391808 - 239251224962.9

Displaying genes 2331 – 2340 of 5224 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.