Pseudomonas toyotomiensis strain JCM 15604

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Ectopseudomonas

Description

Pseudomonas toyotomiensis strain JCM 15604 is characterized by its rod-shaped morphology and the presence of flagella, which suggests a capability for motility in various environments. This strain possesses a single replicon, indicating a streamlined genomic organization that can potentially facilitate efficient replication and metabolic processes. The accession number for this strain is FOXK00000000.1, which serves as a reference for genetic and genomic studies. This information can be crucial for researchers looking to explore the genetic underpinnings of this organism and its potential applications in microbiology. In terms of biological and ecological insights, the presence of flagella in Pseudomonas toyotomiensis may enhance its adaptability and survival in diverse habitats, such as soil and water. This motility can facilitate the organism's ability to colonize various niches, contributing to its ecological role in nutrient cycling and possibly in the degradation of organic compounds. Overall, the traits of Pseudomonas toyotomiensis strain JCM 15604 highlight its potential significance within microbial communities and its utility in biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusEctopseudomonas
SpeciesEctopseudomonas toyotomiensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas toyotomiensis strain JCM 15604 genome assembly,

Gene Summary

Adenine Count

1027368 bp

Thymine Count

1025243 bp

Guanine Count

1717380 bp

Cytosine Count

1719813 bp

Genome Length

5489814 bp

Protein-coding Genes

5018 genes

Non-Coding Genes

206 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN05216177_104328Not AvailablePositive2194630 - 21948005891.02
mfs transporter, nnp family, nitrate/nitrite transporterSAMN05216177_104329Not AvailablePositive2195193 - 219640442449.5
serine/threonine protein phosphatase prpcSAMN05216177_104330Not AvailablePositive2196521 - 219818861844.9
assimilatory nitrite reductase (nad(p)h) large subunit precursorSAMN05216177_104332Not AvailablePositive2198545 - 220100189669.1
assimilatory nitrite reductase (nad(p)h) small subunitSAMN05216177_104333Not AvailablePositive2200998 - 220131511485.8
assimilatory nitrate reductase (nadh) alpha subunit apoproteinSAMN05216177_104334Not AvailablePositive2201403 - 220412098744.5
uroporphyrin-iii c-methyltransferaseSAMN05216177_104335Not AvailablePositive2204267 - 220501025815.6
ompa-ompf porin, oop familySAMN05216177_104336Not AvailableNegative2205125 - 220610534910.4
rna polymerase sigma-70 factor, ecf subfamilySAMN05216177_104337Not AvailableNegative2206214 - 220678622720.2
conserved tm helixSAMN05216177_104338Not AvailableNegative2206887 - 220771128918.4

Displaying genes 2161 – 2170 of 5224 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.