Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein yige, duf2233 family | SAMN05443579_101909 | Not Available | Negative | 1004049 - 1004777 | 26648.2 |
| isocitrate dehydrogenase (nad+) | SAMN05443579_101910 | Not Available | Negative | 1004804 - 1005835 | 36533.4 |
| protein of unknown function | SAMN05443579_101911 | Not Available | Negative | 1005948 - 1006313 | 13834.4 |
| transferase hexapeptide (six repeat-containing protein) | SAMN05443579_101912 | Not Available | Negative | 1006310 - 1006948 | 21437.0 |
| methionyl-trna synthetase | SAMN05443579_101913 | Not Available | Positive | 1007058 - 1009154 | 76682.4 |
| hypothetical protein | SAMN05443579_101914 | Not Available | Positive | 1009184 - 1009402 | 6756.29 |
| regulatory protein, luxr family | SAMN05443579_101915 | Not Available | Negative | 1009422 - 1010150 | 25606.3 |
| amidase | SAMN05443579_101916 | Not Available | Positive | 1010317 - 1011750 | 49295.1 |
| outer membrane autotransporter barrel domain-containing protein | SAMN05443579_101917 | Not Available | Negative | 1011755 - 1015294 | 118859.0 |
| signal transduction histidine kinase | SAMN05443579_101918 | Not Available | Negative | 1015426 - 1017243 | 67639.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
