Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two-component system, ompr family, copper resistance phosphate regulon response regulator cusr | SAMN05443579_10177 | Not Available | Positive | 79711 - 80388 | 25587.2 |
| two-component system, ompr family, heavy metal sensor histidine kinase cuss | SAMN05443579_10178 | Not Available | Positive | 80418 - 81758 | 48274.1 |
| triacylglycerol lipase | SAMN05443579_10179 | Not Available | Positive | 81977 - 82933 | 33095.8 |
| lipase chaperone limk | SAMN05443579_10180 | Not Available | Positive | 82930 - 83871 | 34011.9 |
| signal transduction histidine kinase | SAMN05443579_10181 | Not Available | Negative | 83878 - 85245 | 49548.1 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN05443579_10182 | Not Available | Negative | 85223 - 85900 | 24125.2 |
| outer membrane protein | SAMN05443579_10183 | Not Available | Negative | 85916 - 86752 | 30436.2 |
| transporter, cpa2 family | SAMN05443579_10184 | Not Available | Negative | 87040 - 88290 | 42747.1 |
| signal transduction histidine kinase | SAMN05443579_10185 | Not Available | Negative | 88300 - 90168 | 67804.6 |
| transcriptional regulator, hxlr family | SAMN05443579_10186 | Not Available | Negative | 90194 - 90511 | 11896.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
