Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyphosphate kinase 2, pa0141 family | SAMN05443579_101798 | Not Available | Negative | 893343 - 894272 | 36151.3 |
| inorganic phosphate transporter, pit family | SAMN05443579_101799 | Not Available | Positive | 894431 - 896071 | 57188.1 |
| zinc transporter | SAMN05443579_101800 | Not Available | Positive | 896085 - 897155 | 39145.9 |
| hypothetical protein | SAMN05443579_101801 | Not Available | Positive | 897251 - 898108 | 31007.4 |
| threonine/homoserine efflux transporter rhta | SAMN05443579_101802 | Not Available | Positive | 898105 - 899082 | 34709.2 |
| trna threonylcarbamoyl adenosine modification protein, sua5/ycio/yrdc/ywlc family | SAMN05443579_101803 | Not Available | Positive | 899098 - 899733 | 23218.0 |
| zn-dependent protease (includes spoivfb) | SAMN05443579_101804 | Not Available | Positive | 899778 - 900449 | 24360.8 |
| tryptophanyl-trna synthetase | SAMN05443579_101805 | Not Available | Positive | 900476 - 901813 | 48540.7 |
| two component transcriptional regulator, luxr family | SAMN05443579_101806 | Not Available | Positive | 901888 - 902487 | 21702.2 |
| hypothetical protein | SAMN05443579_101807 | Not Available | Negative | 902572 - 903783 | 42013.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
