Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two-component system, ompr family, heavy metal sensor histidine kinase cuss | SAMN05443579_101768 | Not Available | Negative | 860593 - 861969 | 50175.2 |
| two-component system, ompr family, copper resistance phosphate regulon response regulator cusr | SAMN05443579_101769 | Not Available | Negative | 861966 - 862652 | 25632.4 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN05443579_101770 | Not Available | Negative | 862697 - 865858 | 112593.0 |
| membrane fusion protein, multidrug efflux system | SAMN05443579_101771 | Not Available | Negative | 865855 - 867099 | 42945.9 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN05443579_101772 | Not Available | Negative | 867104 - 868621 | 52573.7 |
| hypothetical protein | SAMN05443579_101773 | Not Available | Positive | 868791 - 869036 | 8552.31 |
| predicted oxidoreductase | SAMN05443579_101774 | Not Available | Negative | 869061 - 870071 | 36869.2 |
| 40-residue yvtn family beta-propeller repeat-containing protein | SAMN05443579_101775 | Not Available | Negative | 870158 - 871399 | 42401.5 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05443579_101776 | Not Available | Positive | 871543 - 872106 | 21469.3 |
| transmembrane transcriptional regulator (anti-sigma factor rsiw) | SAMN05443579_101777 | Not Available | Positive | 872093 - 872752 | 23159.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
