Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent deacetylase | SAMN05443579_101758 | Not Available | Negative | 851366 - 852091 | 26087.6 |
| uncharacterized short protein ybdd, duf466 family | SAMN05443579_101759 | Not Available | Negative | 852152 - 852388 | 8780.54 |
| carbon starvation protein | SAMN05443579_101760 | Not Available | Negative | 852415 - 854493 | 73797.7 |
| hypothetical protein | SAMN05443579_101761 | Not Available | Positive | 854727 - 855086 | 13448.9 |
| cell wall-associated hydrolase, nlpc family | SAMN05443579_101762 | Not Available | Negative | 855096 - 855635 | 18789.2 |
| dna-binding protein hu-beta | SAMN05443579_101763 | Not Available | Negative | 855787 - 856077 | 9810.66 |
| two component transcriptional regulator, luxr family | SAMN05443579_101764 | Not Available | Negative | 856390 - 857043 | 23529.6 |
| two-component system, narl family, sensor kinase | SAMN05443579_101765 | Not Available | Negative | 857093 - 858475 | 50428.6 |
| hygromycin-b 4-o-kinase | SAMN05443579_101766 | Not Available | Negative | 858519 - 859475 | 35054.5 |
| membrane protein deda, snare-associated domain | SAMN05443579_101767 | Not Available | Negative | 859501 - 860439 | 32750.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
