Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ggdef domain-containing protein, diguanylate cyclase (c-di-gmp synthetase) or its enzymatically inactive variants | SAMN05443579_101748 | Not Available | Positive | 839313 - 840719 | 49824.0 |
| lipoprotein nlpd | SAMN05443579_101749 | Not Available | Positive | 840832 - 841590 | 26637.8 |
| dna-binding protein h-ns | SAMN05443579_101750 | Not Available | Positive | 842125 - 842475 | 12661.1 |
| helix-turn-helix domain-containing protein | SAMN05443579_101751 | Not Available | Negative | 842727 - 843650 | 33113.8 |
| hypothetical protein | SAMN05443579_101752 | Not Available | Positive | 843914 - 844480 | 20841.9 |
| udp:flavonoid glycosyltransferase yjic, ydhe family | SAMN05443579_101753 | Not Available | Negative | 844481 - 845713 | 42689.4 |
| transcriptional regulator, tetr family | SAMN05443579_101754 | Not Available | Negative | 845710 - 846366 | 24484.4 |
| head domain of trimeric autotransporter adhesin | SAMN05443579_101755 | Not Available | Positive | 846597 - 849062 | 75213.1 |
| protein of unknown function | SAMN05443579_101756 | Not Available | Positive | 849207 - 850472 | 47258.5 |
| ribosomal protein s18 acetylase rimi | SAMN05443579_101757 | Not Available | Positive | 850531 - 850989 | 16932.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
