Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna(arg) a34 adenosine deaminase tada | SAMN05443579_101738 | Not Available | Positive | 828908 - 829435 | 18834.1 |
| urease accessory protein | SAMN05443579_101739 | Not Available | Positive | 829469 - 830299 | 30322.4 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN05443579_101740 | Not Available | Positive | 830424 - 831950 | 54200.8 |
| dna-binding transcriptional regulator, lysr family | SAMN05443579_101741 | Not Available | Negative | 831958 - 832830 | 32032.1 |
| predicted metal-dependent enzyme of the double-stranded beta helix superfamily | SAMN05443579_101742 | Not Available | Positive | 832937 - 833527 | 21479.5 |
| 3-mercaptopyruvate sulfurtransferase ssea, contains two rhodanese domains | SAMN05443579_101743 | Not Available | Positive | 833562 - 835133 | 56156.6 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05443579_101744 | Not Available | Positive | 835228 - 836259 | 35805.8 |
| cystathionine beta-lyase | SAMN05443579_101745 | Not Available | Positive | 836295 - 837497 | 42914.3 |
| predicted arabinose efflux permease, mfs family | SAMN05443579_101746 | Not Available | Negative | 837506 - 838702 | 41277.8 |
| transcriptional regulator, arsr family | SAMN05443579_101747 | Not Available | Positive | 838851 - 839255 | 14755.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
