Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ubiquinone/menaquinone biosynthesis c-methylase ubie | SAMN05443579_101718 | Not Available | Negative | 810949 - 811818 | 30697.7 |
| dna-binding transcriptional regulator, merr family | SAMN05443579_101719 | Not Available | Positive | 811896 - 812366 | 17000.6 |
| oxidoreductase-like protein, n-terminal | SAMN05443579_101720 | Not Available | Negative | 812330 - 812566 | 8169.83 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN05443579_101721 | Not Available | Positive | 812652 - 813773 | 41005.0 |
| signal transduction histidine kinase | SAMN05443579_101722 | Not Available | Negative | 813774 - 815120 | 48383.3 |
| two-component system, ompr family, response regulator basr/two-component system, ompr family, response regulator tctd | SAMN05443579_101723 | Not Available | Negative | 815117 - 815800 | 24553.7 |
| pap2 superfamily protein | SAMN05443579_101724 | Not Available | Positive | 815900 - 816583 | 24827.8 |
| beta-hydroxylase | SAMN05443579_101725 | Not Available | Negative | 816602 - 817498 | 34700.7 |
| two-component system, ompr family, sensor histidine kinase qsec | SAMN05443579_101726 | Not Available | Negative | 817606 - 819042 | 52842.4 |
| two-component system, ompr family, response regulator qseb | SAMN05443579_101727 | Not Available | Negative | 819039 - 819728 | 25390.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
