Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-hydroxy-3-oxopropionate reductase | SAMN05443579_101708 | Not Available | Positive | 799129 - 800037 | 31162.9 |
| dehydrogenase (flavoprotein) | SAMN05443579_101709 | Not Available | Negative | 800047 - 801387 | 50218.0 |
| malate dehydrogenase (oxaloacetate-decarboxylating)(nadp+) | SAMN05443579_101710 | Not Available | Positive | 801643 - 803943 | 82192.6 |
| hypothetical protein | SAMN05443579_101711 | Not Available | Negative | 803968 - 805032 | 37567.1 |
| uncharacterized membrane protein, oligopeptide transporter (opt) family | SAMN05443579_101712 | Not Available | Negative | 805081 - 806703 | 55180.0 |
| transcriptional regulator, iclr family | SAMN05443579_101713 | Not Available | Positive | 806866 - 807639 | 27386.9 |
| nitt/taut family transport system substrate-binding protein | SAMN05443579_101714 | Not Available | Positive | 807784 - 808818 | 36464.1 |
| nitt/taut family transport system atp-binding protein | SAMN05443579_101715 | Not Available | Positive | 808818 - 809669 | 31775.7 |
| nitt/taut family transport system permease protein | SAMN05443579_101716 | Not Available | Positive | 809679 - 810449 | 28104.2 |
| protein of unknown function | SAMN05443579_101717 | Not Available | Negative | 810456 - 810956 | 17623.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
