Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal transduction histidine kinase | SAMN05443579_101698 | Not Available | Positive | 785163 - 786959 | 64524.7 |
| predicted metal-dependent phosphoesterase trph, contains php domain | SAMN05443579_101699 | Not Available | Positive | 787109 - 789826 | 95844.4 |
| aerobic c4-dicarboxylate transport protein | SAMN05443579_101700 | Not Available | Positive | 790009 - 791337 | 46477.8 |
| dna-binding transcriptional regulator, gntr family | SAMN05443579_101701 | Not Available | Positive | 791358 - 792065 | 25673.8 |
| predicted purr-regulated permease perm | SAMN05443579_101702 | Not Available | Positive | 792167 - 793306 | 40751.7 |
| uncharacterized conserved protein, duf2141 family | SAMN05443579_101703 | Not Available | Positive | 793447 - 793908 | 15720.7 |
| carotenoid cleavage dioxygenase | SAMN05443579_101704 | Not Available | Positive | 793919 - 795424 | 54683.4 |
| dna-binding transcriptional regulator, lysr family | SAMN05443579_101705 | Not Available | Negative | 795441 - 796343 | 33010.9 |
| tartronate-semialdehyde synthase | SAMN05443579_101706 | Not Available | Positive | 796474 - 798267 | 65025.5 |
| hydroxypyruvate isomerase | SAMN05443579_101707 | Not Available | Positive | 798308 - 799093 | 28762.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
