Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator, lysr family | SAMN05443579_10157 | Not Available | Positive | 57279 - 58175 | 32919.2 |
| udp-glucose 4-epimerase | SAMN05443579_10158 | Not Available | Negative | 58172 - 59173 | 35693.7 |
| bile acid:na+ symporter, bass family | SAMN05443579_10159 | Not Available | Negative | 59170 - 60072 | 31698.1 |
| predicted flavoprotein czco associated with the cation diffusion facilitator czcd | SAMN05443579_10160 | Not Available | Negative | 60099 - 61439 | 49328.5 |
| short-chain dehydrogenase | SAMN05443579_10161 | Not Available | Negative | 61436 - 62284 | 29289.7 |
| d-xylulose reductase | SAMN05443579_10162 | Not Available | Negative | 62390 - 63436 | 36870.8 |
| carbohydrate abc transporter atp-binding protein, cut1 family | SAMN05443579_10163 | Not Available | Negative | 63476 - 64618 | 41884.7 |
| carbohydrate abc transporter membrane protein 2, cut1 family | SAMN05443579_10164 | Not Available | Negative | 64615 - 65514 | 32095.1 |
| carbohydrate abc transporter membrane protein 1, cut1 family | SAMN05443579_10165 | Not Available | Negative | 65511 - 66380 | 32383.5 |
| multiple sugar transport system substrate-binding protein | SAMN05443579_10166 | Not Available | Negative | 66415 - 67707 | 46548.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
