Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite atp-independent transporter solute receptor, dctp family | SAMN05443579_101628 | Not Available | Negative | 707877 - 708914 | 37393.0 |
| transcriptional regulator, laci family | SAMN05443579_101629 | Not Available | Positive | 709027 - 710100 | 38519.4 |
| hypothetical protein | SAMN05443579_101630 | Not Available | Positive | 710139 - 710576 | 15891.1 |
| dna-binding transcriptional regulator, lysr family | SAMN05443579_101631 | Not Available | Negative | 710583 - 711512 | 34478.2 |
| glucose/arabinose dehydrogenase, beta-propeller fold | SAMN05443579_101632 | Not Available | Positive | 711627 - 712844 | 44531.9 |
| cytochrome c553 | SAMN05443579_101633 | Not Available | Positive | 712855 - 713523 | 23489.2 |
| indolepyruvate ferredoxin oxidoreductase alpha subunit | SAMN05443579_101634 | Not Available | Positive | 713629 - 715797 | 77885.9 |
| indolepyruvate ferredoxin oxidoreductase beta subunit | SAMN05443579_101635 | Not Available | Positive | 715811 - 717454 | 58393.3 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05443579_101636 | Not Available | Positive | 717493 - 718485 | 34408.4 |
| trap-type c4-dicarboxylate transport system, substrate-binding protein | SAMN05443579_101637 | Not Available | Positive | 718573 - 719610 | 37612.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
