Variovorax sp. PDC80

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. PDC80 is a rod-shaped bacterium characterized by a single replicon. This species is part of the diverse genus Variovorax, which is known for its metabolic versatility and ability to thrive in various environments. The accession number for this strain is FOWG00000000.1, indicating its sequence data is available for further study. The rod shape of Variovorax sp. PDC80 suggests a morphology that may play a role in its motility and ability to colonize different substrates. Rod-shaped bacteria often exhibit efficient nutrient uptake and can adapt to various ecological niches due to their shape, which may facilitate interaction with their environment. As members of the Variovorax genus are often involved in bioremediation processes, Variovorax sp. PDC80 may possess traits that allow it to degrade pollutants or utilize complex organic compounds. This ecological role underscores the importance of such microorganisms in environmental health and the cycling of nutrients. In summary, Variovorax sp. PDC80, with its rod shape and single replicon, represents a significant member of its genus with potential applications in bioremediation. Its metabolic capabilities may provide insights into the ecological functions of bacteria in natural and contaminated environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. PDC80
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. PDC80 genome assembly, contig: Ga0115521_142, whole

Gene Summary

Adenine Count

1362819 bp

Thymine Count

1362565 bp

Guanine Count

3114901 bp

Cytosine Count

3122091 bp

Genome Length

8962376 bp

Protein-coding Genes

8074 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative spermidine/putrescine transport system substrate-binding proteinSAMN05443579_10147Not AvailablePositive48328 - 4959646145.6
putative spermidine/putrescine transport system permease proteinSAMN05443579_10148Not AvailablePositive49601 - 5051833918.5
putative spermidine/putrescine transport system permease proteinSAMN05443579_10149Not AvailablePositive50823 - 5171331728.4
sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamilySAMN05443579_10150Not AvailablePositive51775 - 5290543031.0
hypothetical proteinSAMN05443579_10151Not AvailablePositive52905 - 5369327638.5
hypothetical proteinSAMN05443579_10152Not AvailablePositive53755 - 5498743891.5
ssu ribosomal protein s21pSAMN05443579_10153Not AvailablePositive55100 - 553128506.61
hypothetical proteinSAMN05443579_10154Not AvailablePositive55440 - 5588915780.4
8-oxo-dgtp pyrophosphatase mutt, nudix familySAMN05443579_10155Not AvailablePositive55895 - 5638617579.8
hypothetical proteinSAMN05443579_10156Not AvailableNegative56403 - 5717626243.2

Displaying genes 51 – 60 of 8130 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.