Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative spermidine/putrescine transport system substrate-binding protein | SAMN05443579_10147 | Not Available | Positive | 48328 - 49596 | 46145.6 |
| putative spermidine/putrescine transport system permease protein | SAMN05443579_10148 | Not Available | Positive | 49601 - 50518 | 33918.5 |
| putative spermidine/putrescine transport system permease protein | SAMN05443579_10149 | Not Available | Positive | 50823 - 51713 | 31728.4 |
| sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | SAMN05443579_10150 | Not Available | Positive | 51775 - 52905 | 43031.0 |
| hypothetical protein | SAMN05443579_10151 | Not Available | Positive | 52905 - 53693 | 27638.5 |
| hypothetical protein | SAMN05443579_10152 | Not Available | Positive | 53755 - 54987 | 43891.5 |
| ssu ribosomal protein s21p | SAMN05443579_10153 | Not Available | Positive | 55100 - 55312 | 8506.61 |
| hypothetical protein | SAMN05443579_10154 | Not Available | Positive | 55440 - 55889 | 15780.4 |
| 8-oxo-dgtp pyrophosphatase mutt, nudix family | SAMN05443579_10155 | Not Available | Positive | 55895 - 56386 | 17579.8 |
| hypothetical protein | SAMN05443579_10156 | Not Available | Negative | 56403 - 57176 | 26243.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
