Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| galactosyl transferase gma12/mnn10 family protein | SAMN05443579_101578 | Not Available | Positive | 650545 - 651933 | 51402.8 |
| ribosomal protein s18 acetylase rimi | SAMN05443579_101579 | Not Available | Negative | 651938 - 652399 | 17671.9 |
| gtpase, g3e family | SAMN05443579_101580 | Not Available | Negative | 652470 - 653459 | 34073.8 |
| hypothetical protein | SAMN05443579_101581 | Not Available | Negative | 653467 - 655137 | 60609.8 |
| peptide/nickel transport system atp-binding protein | SAMN05443579_101582 | Not Available | Negative | 655186 - 656220 | 37565.8 |
| peptide/nickel transport system atp-binding protein | SAMN05443579_101583 | Not Available | Negative | 656217 - 657248 | 37314.1 |
| peptide/nickel transport system permease protein | SAMN05443579_101584 | Not Available | Negative | 657250 - 658188 | 32887.7 |
| peptide/nickel transport system permease protein | SAMN05443579_101585 | Not Available | Negative | 658200 - 659174 | 34768.7 |
| peptide/nickel transport system substrate-binding protein | SAMN05443579_101586 | Not Available | Negative | 659187 - 660788 | 58358.4 |
| glycine/d-amino acid oxidase | SAMN05443579_101587 | Not Available | Negative | 661000 - 662451 | 53274.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
