Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05443579_101487 | Not Available | Positive | 553702 - 554034 | 12308.5 |
| hypothetical protein | SAMN05443579_101488 | Not Available | Negative | 554012 - 554299 | 10267.2 |
| hypothetical protein | SAMN05443579_101489 | Not Available | Negative | 554529 - 554897 | 13919.4 |
| hypothetical protein | SAMN05443579_101490 | Not Available | Negative | 554924 - 555418 | 18241.4 |
| rhs repeat-associated core domain-containing protein | SAMN05443579_101491 | Not Available | Negative | 555445 - 559983 | 165252.0 |
| hypothetical protein | SAMN05443579_101492 | Not Available | Negative | 560018 - 560452 | 16102.2 |
| hypothetical protein | SAMN05443579_101493 | Not Available | Negative | 560469 - 560795 | 11721.9 |
| type vi secretion system secreted protein vgrg | SAMN05443579_101494 | Not Available | Negative | 560825 - 564052 | 115886.0 |
| type vi secretion system secreted protein hcp | SAMN05443579_101495 | Not Available | Negative | 564141 - 564623 | 17222.2 |
| nad-dependent deacetylase | SAMN05443579_101496 | Not Available | Negative | 564832 - 565548 | 26181.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
