Variovorax sp. PDC80

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. PDC80 is a rod-shaped bacterium characterized by a single replicon. This species is part of the diverse genus Variovorax, which is known for its metabolic versatility and ability to thrive in various environments. The accession number for this strain is FOWG00000000.1, indicating its sequence data is available for further study. The rod shape of Variovorax sp. PDC80 suggests a morphology that may play a role in its motility and ability to colonize different substrates. Rod-shaped bacteria often exhibit efficient nutrient uptake and can adapt to various ecological niches due to their shape, which may facilitate interaction with their environment. As members of the Variovorax genus are often involved in bioremediation processes, Variovorax sp. PDC80 may possess traits that allow it to degrade pollutants or utilize complex organic compounds. This ecological role underscores the importance of such microorganisms in environmental health and the cycling of nutrients. In summary, Variovorax sp. PDC80, with its rod shape and single replicon, represents a significant member of its genus with potential applications in bioremediation. Its metabolic capabilities may provide insights into the ecological functions of bacteria in natural and contaminated environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. PDC80
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. PDC80 genome assembly, contig: Ga0115521_142, whole

Gene Summary

Adenine Count

1362819 bp

Thymine Count

1362565 bp

Guanine Count

3114901 bp

Cytosine Count

3122091 bp

Genome Length

8962376 bp

Protein-coding Genes

8074 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
n6-l-threonylcarbamoyladenine synthaseSAMN05443579_10137Not AvailableNegative35411 - 3646336566.5
antar domain-containing proteinSAMN05443579_10138Not AvailablePositive36544 - 3783647582.0
nitrate/nitrite transport system substrate-binding proteinSAMN05443579_10139Not AvailablePositive38176 - 3942045412.7
nitrate/nitrite transport system permease proteinSAMN05443579_10140Not AvailablePositive39431 - 4034832905.1
nitrate/nitrite transport system atp-binding proteinSAMN05443579_10141Not AvailablePositive40345 - 4115429106.6
nitrite reductaseSAMN05443579_10142Not AvailablePositive41245 - 4249845407.1
assimilatory nitrate reductase (nadh) alpha subunit apoproteinSAMN05443579_10143Not AvailablePositive42495 - 4527299602.7
anthranilate phosphoribosyltransferaseSAMN05443579_10144Not AvailablePositive45360 - 4626532029.0
uroporphyrin-iii c-methyltransferaseSAMN05443579_10145Not AvailablePositive46262 - 4707427716.6
putative spermidine/putrescine transport system atp-binding proteinSAMN05443579_10146Not AvailablePositive47168 - 4827138777.9

Displaying genes 41 – 50 of 8130 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.