Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-methionine transport system permease protein | SAMN05443579_101477 | Not Available | Negative | 542934 - 543596 | 23472.6 |
| d-methionine transport system atp-binding protein | SAMN05443579_101478 | Not Available | Negative | 543589 - 544482 | 32468.9 |
| d-methionine transport system substrate-binding protein | SAMN05443579_101479 | Not Available | Positive | 544769 - 545590 | 29081.2 |
| hypothetical protein | SAMN05443579_101480 | Not Available | Negative | 545521 - 545679 | 5431.55 |
| bacterial peptide chain release factor 2 (brf-2) | SAMN05443579_101481 | Not Available | Positive | 546032 - 546874 | 31261.5 |
| haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed | SAMN05443579_101482 | Not Available | Positive | 546924 - 547610 | 24736.7 |
| alanyl aminopeptidase. metallo peptidase. merops family m01 | SAMN05443579_101483 | Not Available | Positive | 547594 - 550311 | 100365.0 |
| d-fructose 1,6-bisphosphatase | SAMN05443579_101484 | Not Available | Positive | 550355 - 551368 | 37488.1 |
| Trna-thr | Not Available | Not Available | Positive | 551394 - 551466 | Not Available |
| protein of unknown function duf262 | SAMN05443579_101486 | Not Available | Negative | 552192 - 553304 | 42488.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
