Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN05443579_101467 | Not Available | Positive | 535124 - 535678 | 19914.7 |
| transcriptional regulator, xre family | SAMN05443579_101468 | Not Available | Positive | 535682 - 535897 | 8065.86 |
| hypothetical protein | SAMN05443579_101469 | Not Available | Positive | 535897 - 536466 | 19608.8 |
| predicted oxidoreductase | SAMN05443579_101470 | Not Available | Negative | 536476 - 537477 | 36816.7 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05443579_101471 | Not Available | Positive | 537664 - 538590 | 35064.7 |
| aspartate racemase | SAMN05443579_101472 | Not Available | Negative | 538607 - 539305 | 25036.1 |
| d-methionine transport system substrate-binding protein | SAMN05443579_101473 | Not Available | Positive | 539423 - 540241 | 29248.2 |
| fmn-dependent oxidoreductase, nitrilotriacetate monooxygenase family | SAMN05443579_101474 | Not Available | Positive | 540249 - 541607 | 48890.9 |
| hypothetical protein | SAMN05443579_101475 | Not Available | Negative | 541654 - 542025 | 13086.2 |
| d-methionine transport system substrate-binding protein | SAMN05443579_101476 | Not Available | Negative | 542056 - 542880 | 29836.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
