Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome p450 | SAMN05443579_101417 | Not Available | Positive | 445911 - 448268 | 87334.9 |
| hypothetical protein | SAMN05443579_101418 | Not Available | Positive | 448398 - 449213 | 29671.3 |
| triacylglycerol lipase | SAMN05443579_101419 | Not Available | Positive | 449210 - 449803 | 21910.5 |
| acyl-homoserine-lactone acylase | SAMN05443579_101420 | Not Available | Negative | 449814 - 452207 | 85642.5 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN05443579_101421 | Not Available | Negative | 452397 - 453875 | 51479.1 |
| macrolide transport system atp-binding/permease protein | SAMN05443579_101422 | Not Available | Negative | 453914 - 455899 | 70353.2 |
| membrane fusion protein, macrolide-specific efflux system | SAMN05443579_101423 | Not Available | Negative | 455961 - 457145 | 42144.4 |
| putative atp-binding cassette transporter | SAMN05443579_101424 | Not Available | Negative | 457284 - 458963 | 61215.1 |
| hypothetical protein | SAMN05443579_101425 | Not Available | Negative | 459001 - 459240 | 8759.29 |
| ferric iron reductase protein fhuf | SAMN05443579_101426 | Not Available | Positive | 459419 - 460171 | 27238.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
