Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized membrane protein | SAMN05443579_101397 | Not Available | Negative | 423532 - 424194 | 24126.7 |
| cytochrome c553 | SAMN05443579_101398 | Not Available | Positive | 424375 - 425133 | 26703.3 |
| cytochrome c, mono-and diheme variants | SAMN05443579_101399 | Not Available | Positive | 425144 - 426436 | 45924.4 |
| signal transduction histidine kinase | SAMN05443579_101400 | Not Available | Negative | 426447 - 427751 | 45684.8 |
| two-component system, ompr family, response regulator | SAMN05443579_101401 | Not Available | Negative | 427748 - 428488 | 27879.0 |
| uncharacterized conserved protein, duf2147 family | SAMN05443579_101402 | Not Available | Positive | 428654 - 429124 | 16524.8 |
| cytochrome c biogenesis protein ccda | SAMN05443579_101403 | Not Available | Positive | 429139 - 430299 | 41316.5 |
| hypothetical protein | SAMN05443579_101404 | Not Available | Positive | 430489 - 431319 | 28780.2 |
| acyl-coa synthetase (amp-forming)/amp-acid ligase ii | SAMN05443579_101405 | Not Available | Negative | 431362 - 432915 | 55901.9 |
| uncharacterized conserved protein | SAMN05443579_101406 | Not Available | Negative | 432919 - 434055 | 40649.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
