Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide-methionine (s)-s-oxide reductase | SAMN05443579_101387 | Not Available | Negative | 413471 - 414022 | 20277.6 |
| transcriptional regulator, tetr family | SAMN05443579_101388 | Not Available | Positive | 414123 - 414836 | 26768.2 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | SAMN05443579_101389 | Not Available | Positive | 414878 - 415555 | 24787.0 |
| rhodanese-related sulfurtransferase | SAMN05443579_101390 | Not Available | Positive | 415570 - 415908 | 12168.4 |
| outer membrane protein | SAMN05443579_101391 | Not Available | Positive | 415933 - 417471 | 53857.9 |
| 3-deoxy-d-manno-octulosonic-acid transferase | SAMN05443579_101392 | Not Available | Negative | 417476 - 418906 | 51393.5 |
| phosphomannomutase | SAMN05443579_101393 | Not Available | Negative | 418913 - 420295 | 48671.3 |
| dna-3-methyladenine glycosylase ii | SAMN05443579_101394 | Not Available | Positive | 420410 - 422023 | 57387.7 |
| methylated-dna-[protein]-cysteine s-methyltransferase | SAMN05443579_101395 | Not Available | Positive | 422030 - 422527 | 17667.9 |
| eama-like transporter family protein | SAMN05443579_101396 | Not Available | Positive | 422592 - 423524 | 32126.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
