Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein translocase subunit secg | SAMN05443579_10127 | Not Available | Negative | 25313 - 25717 | 12792.6 |
| triosephosphate isomerase | SAMN05443579_10128 | Not Available | Negative | 25755 - 26516 | 25978.1 |
| nadph2:quinone reductase | SAMN05443579_10129 | Not Available | Negative | 26530 - 27528 | 34417.7 |
| polyribonucleotide nucleotidyltransferase | SAMN05443579_10130 | Not Available | Negative | 27625 - 29982 | 85514.1 |
| ssu ribosomal protein s15p | SAMN05443579_10131 | Not Available | Negative | 30189 - 30455 | 9889.12 |
| permease of the drug/metabolite transporter (dmt) superfamily | SAMN05443579_10132 | Not Available | Negative | 30546 - 31463 | 31641.7 |
| transcriptional regulator, arac family | SAMN05443579_10133 | Not Available | Negative | 31545 - 32342 | 27841.5 |
| aspartate/methionine/tyrosine aminotransferase | SAMN05443579_10134 | Not Available | Negative | 32343 - 33506 | 42021.5 |
| amino acid/amide abc transporter substrate-binding protein, haat family | SAMN05443579_10135 | Not Available | Negative | 33551 - 34831 | 46666.9 |
| molecular chaperone ibpa, hsp20 family | SAMN05443579_10136 | Not Available | Positive | 34954 - 35328 | 13660.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
