Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endonuclease/exonuclease/phosphatase family protein | SAMN05443579_101347 | Not Available | Positive | 373278 - 374309 | 38301.6 |
| l-alanine-dl-glutamate epimerase | SAMN05443579_101348 | Not Available | Negative | 374322 - 375518 | 43924.6 |
| tripartite atp-independent transporter solute receptor, dctp family | SAMN05443579_101349 | Not Available | Negative | 375584 - 376591 | 36545.2 |
| trap transporter, dctm subunit | SAMN05443579_101350 | Not Available | Negative | 376653 - 377954 | 45591.2 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05443579_101351 | Not Available | Negative | 377951 - 378517 | 20852.1 |
| transcriptional regulator, gntr family | SAMN05443579_101352 | Not Available | Negative | 378612 - 379361 | 27178.9 |
| dihydroxyacid dehydratase | SAMN05443579_101353 | Not Available | Positive | 379533 - 381272 | 63075.1 |
| 2-keto-3-deoxygalactonate kinase | SAMN05443579_101354 | Not Available | Positive | 381272 - 382192 | 32200.6 |
| 2-keto-3-deoxy-phosphogalactonate aldolase | SAMN05443579_101355 | Not Available | Positive | 382189 - 382830 | 22090.8 |
| ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase | SAMN05443579_101356 | Not Available | Positive | 382867 - 383604 | 26872.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
