Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05443579_101327 | Not Available | Negative | 353632 - 354615 | 33840.1 |
| transcriptional regulator, gntr family | SAMN05443579_101328 | Not Available | Positive | 354675 - 355361 | 24756.6 |
| protein of unknown function | SAMN05443579_101329 | Not Available | Positive | 355466 - 356053 | 20977.4 |
| glycerophosphoryl diester phosphodiesterase | SAMN05443579_101330 | Not Available | Positive | 356050 - 357072 | 36289.4 |
| hypothetical protein | SAMN05443579_101331 | Not Available | Positive | 357069 - 357350 | 9821.69 |
| hypothetical protein | SAMN05443579_101332 | Not Available | Positive | 357377 - 357802 | 14410.1 |
| outer membrane protein tolc | SAMN05443579_101333 | Not Available | Positive | 357880 - 359361 | 53332.7 |
| multicopper oxidase with three cupredoxin domains (includes cell division protein ftsp and spore coat protein cota) | SAMN05443579_101334 | Not Available | Positive | 359363 - 360748 | 50655.9 |
| uncharacterized copper-binding protein, cupredoxin-like subfamily | SAMN05443579_101335 | Not Available | Positive | 360788 - 361300 | 18408.4 |
| uncharacterized conserved protein | SAMN05443579_101336 | Not Available | Positive | 361320 - 361769 | 16194.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
