Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid abc transporter membrane protein 1, paat family | SAMN05443579_101317 | Not Available | Positive | 344107 - 344769 | 23879.8 |
| amino acid abc transporter membrane protein 2, paat family | SAMN05443579_101318 | Not Available | Positive | 344777 - 345430 | 23476.4 |
| amino acid abc transporter atp-binding protein, paat family | SAMN05443579_101319 | Not Available | Positive | 345414 - 346196 | 28357.9 |
| predicted kinase | SAMN05443579_101320 | Not Available | Positive | 346389 - 346883 | 17517.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05443579_101321 | Not Available | Positive | 346984 - 347493 | 18653.4 |
| fecr family protein | SAMN05443579_101322 | Not Available | Positive | 347495 - 348481 | 35841.6 |
| iron complex outermembrane recepter protein | SAMN05443579_101323 | Not Available | Positive | 348584 - 351031 | 88987.6 |
| acetyltransferase (gnat) family protein | SAMN05443579_101324 | Not Available | Positive | 351067 - 351552 | 18001.6 |
| crotonobetainyl-coa:carnitine coa-transferase caib | SAMN05443579_101325 | Not Available | Negative | 351556 - 352779 | 43281.8 |
| enoyl-coa hydratase/carnithine racemase | SAMN05443579_101326 | Not Available | Negative | 352794 - 353585 | 28688.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
