Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05443579_101307 | Not Available | Positive | 334157 - 334408 | 9405.87 |
| hypothetical protein | SAMN05443579_101308 | Not Available | Negative | 334439 - 336376 | 69103.1 |
| endonuclease yncb, thermonuclease family | SAMN05443579_101309 | Not Available | Negative | 336475 - 337002 | 19617.2 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05443579_101310 | Not Available | Positive | 337203 - 337925 | 24704.3 |
| allantoin racemase | SAMN05443579_101311 | Not Available | Positive | 337937 - 338638 | 24347.7 |
| fatty-acyl-coa synthase | SAMN05443579_101312 | Not Available | Negative | 338648 - 340345 | 62258.9 |
| osmotically inducible protein osmc | SAMN05443579_101313 | Not Available | Positive | 340633 - 341073 | 15294.1 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05443579_101314 | Not Available | Positive | 341121 - 342089 | 34208.3 |
| dna-binding transcriptional regulator, gntr family | SAMN05443579_101315 | Not Available | Positive | 342569 - 343294 | 26102.3 |
| amino acid abc transporter substrate-binding protein, paat family | SAMN05443579_101316 | Not Available | Positive | 343291 - 344091 | 28272.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
