Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein | SAMN05443579_101297 | Not Available | Positive | 325176 - 325466 | 10744.9 |
| ferredoxin | SAMN05443579_101298 | Not Available | Positive | 325463 - 325753 | 10309.3 |
| predicted arabinose efflux permease, mfs family | SAMN05443579_101299 | Not Available | Negative | 325755 - 326948 | 41654.7 |
| trna pseudouridine32 synthase / 23s rrna pseudouridine746 synthase | SAMN05443579_101300 | Not Available | Positive | 327152 - 327841 | 25089.3 |
| nucleotide-binding universal stress protein, uspa family | SAMN05443579_101301 | Not Available | Negative | 327887 - 328327 | 15000.2 |
| hypothetical protein | SAMN05443579_101302 | Not Available | Negative | 328524 - 329267 | 27555.6 |
| uncharacterized conserved protein, duf427 family | SAMN05443579_101303 | Not Available | Negative | 329264 - 329548 | 10596.3 |
| dimethylhistidine n-methyltransferase | SAMN05443579_101304 | Not Available | Negative | 330313 - 331353 | 37438.7 |
| ergothioneine biosynthesis protein egtb | SAMN05443579_101305 | Not Available | Negative | 331356 - 332609 | 46111.3 |
| nadh dehydrogenase | SAMN05443579_101306 | Not Available | Positive | 332785 - 334131 | 47395.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
