Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tryptophan 2,3-dioxygenase | SAMN05443579_101277 | Not Available | Negative | 307695 - 308645 | 35792.7 |
| transcriptional regulator, arac family | SAMN05443579_101278 | Not Available | Negative | 308782 - 309768 | 35199.3 |
| fur family transcriptional regulator, ferric uptake regulator | SAMN05443579_101279 | Not Available | Positive | 309921 - 310475 | 19989.7 |
| gtpase, g3e family | SAMN05443579_101280 | Not Available | Negative | 310399 - 311622 | 45526.1 |
| glutathione s-transferase | SAMN05443579_101281 | Not Available | Positive | 311735 - 312364 | 23547.6 |
| dna-binding transcriptional regulator, lysr family | SAMN05443579_101282 | Not Available | Positive | 312361 - 313284 | 33074.5 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05443579_101283 | Not Available | Positive | 313352 - 314332 | 34120.2 |
| formyl-coa transferase | SAMN05443579_101284 | Not Available | Positive | 314368 - 315585 | 43594.4 |
| enoyl-coa hydratase/carnithine racemase | SAMN05443579_101285 | Not Available | Positive | 315582 - 316361 | 27004.3 |
| transcriptional regulator, lysr family | SAMN05443579_101286 | Not Available | Negative | 316362 - 317264 | 32834.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
