Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, lyttr family | SAMN05443579_101257 | Not Available | Negative | 289898 - 290866 | 35987.4 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN05443579_101258 | Not Available | Positive | 291059 - 292288 | 45868.8 |
| uncharacterized domain 1-containing protein | SAMN05443579_101259 | Not Available | Negative | 292294 - 292707 | 14544.7 |
| uncharacterized membrane protein | SAMN05443579_101260 | Not Available | Negative | 292765 - 293349 | 20736.0 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN05443579_101261 | Not Available | Negative | 293384 - 293989 | 22220.8 |
| ribosome biogenesis gtpase a | SAMN05443579_101262 | Not Available | Negative | 294001 - 294975 | 35405.8 |
| cbs domain-containing protein | SAMN05443579_101263 | Not Available | Positive | 295239 - 295667 | 15945.3 |
| predicted o-linked n-acetylglucosamine transferase, spindly family | SAMN05443579_101264 | Not Available | Positive | 295812 - 297797 | 72606.4 |
| sigma 54 modulation protein / s30ea ribosomal protein | SAMN05443579_101265 | Not Available | Positive | 297938 - 298303 | 13799.2 |
| dna-binding transcriptional regulator, merr family | SAMN05443579_101266 | Not Available | Negative | 298318 - 298818 | 18696.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
