Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine kinase-, dna gyrase b-, and hsp90-like atpase | SAMN05443579_101247 | Not Available | Positive | 278365 - 279483 | 40316.0 |
| two component transcriptional regulator, lyttr family | SAMN05443579_101248 | Not Available | Positive | 279480 - 280325 | 30623.1 |
| hypothetical protein | SAMN05443579_101249 | Not Available | Negative | 280408 - 280755 | 12319.6 |
| glutaminyl-trna synthetase | SAMN05443579_101250 | Not Available | Positive | 280893 - 282707 | 67988.9 |
| murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domain | SAMN05443579_101251 | Not Available | Positive | 282810 - 283709 | 31578.0 |
| reverse transcriptase (rna-dependent dna polymerase) | SAMN05443579_101252 | Not Available | Positive | 284338 - 285498 | 44195.2 |
| succinylglutamate desuccinylase | SAMN05443579_101253 | Not Available | Negative | 285856 - 286791 | 34087.6 |
| acetyltransferase (gnat) domain-containing protein | SAMN05443579_101254 | Not Available | Negative | 286918 - 287982 | 40179.9 |
| hypothetical protein | SAMN05443579_101255 | Not Available | Positive | 288125 - 288466 | 12348.1 |
| ammonium transporter | SAMN05443579_101256 | Not Available | Negative | 288491 - 289693 | 42073.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
