Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, rpir family | SAMN05443579_101237 | Not Available | Positive | 264350 - 265216 | 30975.1 |
| spw repeat-containing protein | SAMN05443579_101238 | Not Available | Positive | 265303 - 265668 | 12909.9 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN05443579_101239 | Not Available | Negative | 265795 - 267303 | 52664.9 |
| multidrug efflux pump | SAMN05443579_101240 | Not Available | Negative | 267300 - 270614 | 117215.0 |
| hypothetical protein | SAMN05443579_101241 | Not Available | Negative | 270611 - 271321 | 25502.1 |
| multidrug efflux pump | SAMN05443579_101242 | Not Available | Negative | 271318 - 274446 | 110573.0 |
| membrane fusion protein, multidrug efflux system | SAMN05443579_101243 | Not Available | Negative | 274516 - 276222 | 58314.1 |
| hypothetical protein | SAMN05443579_101244 | Not Available | Positive | 276555 - 277076 | 18322.2 |
| sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | SAMN05443579_101245 | Not Available | Positive | 277122 - 278078 | 36498.4 |
| 2tm domain-containing protein | SAMN05443579_101246 | Not Available | Positive | 278075 - 278368 | 10769.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
