Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclohexyl-isocyanide hydratase | SAMN05443579_101227 | Not Available | Positive | 254357 - 255040 | 24136.1 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05443579_101228 | Not Available | Positive | 255057 - 256025 | 33548.8 |
| mosc domain-containing protein | SAMN05443579_101229 | Not Available | Negative | 256027 - 256542 | 18054.1 |
| two component transcriptional regulator, luxr family | SAMN05443579_101230 | Not Available | Positive | 256643 - 257425 | 27929.9 |
| hypothetical protein | SAMN05443579_101231 | Not Available | Positive | 257428 - 259257 | 66961.4 |
| undecaprenyl-diphosphatase | SAMN05443579_101232 | Not Available | Negative | 259275 - 260102 | 30039.6 |
| hypothetical protein | SAMN05443579_101233 | Not Available | Positive | 260309 - 261217 | 33197.2 |
| hypothetical protein | SAMN05443579_101234 | Not Available | Negative | 261209 - 261871 | 23215.9 |
| amino acid abc transporter substrate-binding protein, paat family | SAMN05443579_101235 | Not Available | Negative | 261888 - 262787 | 32599.4 |
| adenosylmethionine-8-amino-7-oxononanoate aminotransferase | SAMN05443579_101236 | Not Available | Negative | 262842 - 264176 | 47309.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
