Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05443579_101217 | Not Available | Negative | 242939 - 243445 | 18756.7 |
| hypothetical protein | SAMN05443579_101218 | Not Available | Negative | 243430 - 244518 | 40456.5 |
| restriction endonuclease | SAMN05443579_101219 | Not Available | Negative | 244515 - 245510 | 37436.0 |
| hypothetical protein | SAMN05443579_101220 | Not Available | Positive | 246140 - 246895 | 27867.3 |
| hypothetical protein | SAMN05443579_101221 | Not Available | Positive | 247055 - 247258 | 7672.11 |
| integrase | SAMN05443579_101222 | Not Available | Positive | 247622 - 248884 | 47331.7 |
| dna mismatch repair protein muts | SAMN05443579_101223 | Not Available | Positive | 248923 - 251520 | 93563.4 |
| putative proteasome-type protease | SAMN05443579_101224 | Not Available | Positive | 251549 - 252388 | 31038.1 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05443579_101225 | Not Available | Positive | 252394 - 253197 | 29818.0 |
| transcriptional regulator, arac family with amidase-like domain | SAMN05443579_101226 | Not Available | Negative | 253205 - 254200 | 35962.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
