Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine/d-amino acid oxidase | SAMN05443579_102167 | Not Available | Positive | 1384270 - 1385442 | 42313.3 |
| fructose-bisphosphate aldolase, class i | SAMN05443579_102168 | Not Available | Positive | 1385489 - 1386514 | 35816.1 |
| acyl-coa hydrolase | SAMN05443579_102169 | Not Available | Positive | 1386562 - 1387857 | 46421.7 |
| tetratricopeptide repeat-containing protein | SAMN05443579_102170 | Not Available | Positive | 1387854 - 1388633 | 27802.2 |
| hypothetical protein | SAMN05443579_102171 | Not Available | Negative | 1388670 - 1388915 | 8953.01 |
| peptide-methionine (s)-s-oxide reductase | SAMN05443579_102172 | Not Available | Negative | 1388923 - 1389624 | 24981.3 |
| pentapeptide mxkdx repeat protein | SAMN05443579_102173 | Not Available | Negative | 1389731 - 1390033 | 10829.3 |
| dmso/tmao reductase yedyz, molybdopterin-dependent catalytic subunit | SAMN05443579_102174 | Not Available | Negative | 1390088 - 1390879 | 29610.4 |
| thiosulfate reductase cytochrome b subunit | SAMN05443579_102175 | Not Available | Negative | 1391178 - 1391810 | 23508.4 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN05443579_102176 | Not Available | Positive | 1391908 - 1392639 | 27254.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
